I've no direct experience, but you may want to try George at the Acropole Hotel, he seems to know pretty much everyone in town so that's probably a fair place to start.
He helped when a fellow rider had to send his bike back to Europe after the electrical system played up so hopefully he'll have some suggestions. There are options for intercontinental service as flights go in and out but I would guess that options within Africa to specific countries are more limited. Depending on connections out of Khartoum, you might have better luck shipping to a major center like Nairobi.
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