You can easily get into Lima from the south, getting off the Panam at Ave. Benavides which will take you right into Miraflores. Exit south the same way.
To go east up into the Andes and the 3N/3S, go back out on Benavides, cross over the Panam., then work your way north and east to the oval on Javier Prado, then east until it drops you off on the main road going east.
Almost impossible to go north through and out of Lima. besides, you don't want to travel the coast anyway. It's dirty, boring, more expensive, and corupt police on the north coast.
PM for more details on how to get around Lima (there are many great ways!).
 
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