Problem was a rusted ground connection on the starter motor...little bit of contact cleaner and a wire brush sorted it out. I guess that would be from all the rain and rivers I have been riding through. It was also a bit loose on the starter relay side which I tightened up. Since I have cleaned the contact I haven't had the issue again.
I found a bunch of plugs that look like they need some cleaning particularly the 3 big plugs on the junction box side. Plenty of work to be done yet.
Thanks for all the advice guys!
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