unless the battery is boiling, I doubt its the stator/regulator/rectifier, but check the battery. an XR6, having no battery, might indeed have these symptoms from a failing stator.
if its taking a while to go wrong, it sounds likely something is heating up and breaking down. as you've already done the coils, its likely to be something else - CDI, dodgy switch etc. some have "potted" components that take a while to get hot and bothered. if you're unlucky, one thing will have caused the other and it used to be said that you had to swap coils and CDI/ignitor together
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