I don't think that you will have any problems if your on a Carnet. I live in Bali and there are a lot of big bikes there but they don't have any papers and the guy in a local bike shop there is in with the police so he is able to get them in. Only problem is, is that you can't take them off of Bali.
But if your riding through, you should be able to get it in and travel through. Remember to get yourself a visa before arrival though, they won't allow the Dutch to get a visa at the border. I am planning to bring a 1200GS in as well on a Carnet in the next few months.
Anyway good luck and I may run into you some there?