It will be very very complicated to send your bike from Jordan to Greece or Turkey, it will have to be airlifted and the paper work will take ages (Jordan's only sea port is in Aqaba going south to the Red sea). There are NO trains that run from Jordan to Israel or from the border to Haifa. As I know and experienced the regulations of border passing in the ME, i can't think of a way you can send your bike from Cyprus to Turkey without escorting it yourself, and remember that from Cyprus you will reach the south shores of Turkey, not Istanbul, it will take you more than a day to ride to Istanbul.
So as I recomended before, think you will have to cross the boredr from Jordan to Israel, ride to Haifa and choose from the two routes, the one via Cyprus or send your bike to Greece, then fly there take it out from the ship, store it in Athens, fly home and then come to Athens take your bike and ride it to Istanbul.
WOW what and adventure
My ride from Dead horse to Ushuaia 2009 is at
It's in hebrew but lots of pics and some translation